doc/ctsim.tex

   1 \documentclass[letterpaper,11pt]{report}
   2 \usepackage{graphicx}
   3 \usepackage{texhelp}
   4 \usepackage{fancyhea}
   5 \usepackage{mysober}
   6 \usepackage{mytitle}
   7 \usepackage{verbatim}
   8 \usepackage{makeidx}
   9 %\usepackage{times}
  10 \usepackage{hyperref}
  11 \input{psbox.tex}
  12
  13 \latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-algorithms,ctsim-sgp}}
  14 \hyphenation{poly-gon-al multi-thread-ing}
  15
  16 \newcommand{\ctsim}{\texttt{CTSim}}
  17 \newcommand{\ctsimtext}{\texttt{CTSimText}}
  18 \newcommand{\usage}{\textbf{Usage}\par}
  19
  20 \newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
  21 \newcommand{\commandrefn}[2]{\helprefn{{\tt $\backslash$#1}}{#2}\index{#1}}%
  22 \newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}
  23 \newcommand{\indexit}[1]{#1\index{#1}}%
  24 \newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
  25
  26 \newcommand{\manvernum}[0]{1.0}
  27 \newcommand{\manver}[0]{v\manvernum}
  28 \newcommand{\mandate}[0]{May 1, 2002}
  29 \newcommand{\ctsimfooter}{\setfooter{\thepage}{}{}{\small Manual \manver}{\small \mandate}{\thepage}}
  30 \newcommand{\doublehyphen}[1]{-\,-\texttt{#1}}
  31 \newcommand{\ctsimvernum}[0]{3.5.0}
  32 \newcommand{\ctsimver}[0]{CTSim \ctsimvernum}
  33 \newcommand{\ctsimheadtitle}{\ctsimver\ Manual}
  34
  35 \latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}
  36
  37 \parskip=10pt%
  38 \parindent=0pt%
  39 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
  40 \title{CTSim 3.5 User Manual}%
  41 \author{Kevin M. Rosenberg, M.D.}%
  42 \makeindex%
  43
  44 \textheight=9in
  45 \textwidth=6.0in
  46 \evensidemargin=0in
  47 \oddsidemargin=0in
  48
  49 \begin{document}
  50 \maketitle
  51 \pagestyle{fancyplain}
  52 \pagenumbering{roman}
  53
  54 \chapter*{Copyright notice}%
  55 \setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
  56 \ctsimfooter
  57
  58 Copyright (c) 1983-2002 Kevin M. Rosenberg, M.D.
  59
  60 Permission to use, copy, modify, and distribute this software and its
  61 documentation for any purpose is hereby granted without fee, provided that the
  62 above copyright notice, author statement and this permission notice appear in
  63 all copies of this software and related documentation.
  64
  65 THE SOFTWARE IS PROVIDED ``AS-IS'' AND WITHOUT WARRANTY OF ANY KIND, EXPRESS,
  66 IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY WARRANTY OF
  67 MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.
  68
  69 IN NO EVENT SHALL KEVIN M. ROSENBERG BE LIABLE FOR ANY
  70 SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND, OR
  71 ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
  72 WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY
  73 OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
  74 PERFORMANCE OF THIS SOFTWARE.
  75
  76
  77 \chapter*{Acknowledgements}
  78 \setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
  79 \setfooter{\thepage}{}{}{}{\manver}{\thepage}%
  80
  81 \textbf{Ian Kay, Ph.D.}\\ Special thanks to Dr. Kay for contributing
  82 portions to this manual. Dr. Kay has assisted the development of
  83 \ctsim\ with the addition of helical scanning, bug reports, and paches.
  84
  85 \textbf{Gabor T. Herman, Ph.D.}\\ Dr. Herman's publications on
  86 computed tomography inspired the initial version \ctsim\ in
  87 1983. Dr. Herman has graciously permitted use of his copyrighted head
  88 phantom for use in \ctsim.
  89
  90
  91 \setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}%
  92 \ctsimfooter
  93 \parskip=2pt
  94 \tableofcontents%
  95
  96 \parskip=10pt
  97 \chapter{Introduction}\label{IDH_INTRODUCTION}
  98 \pagenumbering{arabic}
  99 \setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
 100 \ctsimfooter
 101
 102
 103 \centerline{\image{3cm;3cm}{logo.eps}}
 104 Computed tomography is a technique for estimating the interior of an
 105 object from measurements of radiation collected around the object. This
 106 radiation can be either projected through or emitted from the
 107 object. \ctsim\ simulates the process of projecting X-rays
 108 through a phantom object. \ctsim\ can then reconstruct the
 109 interior of the object from those projections. \ctsim\ integrates
 110 numerous visualization and analytic tools.
 111
 112 This manual begins with an introduction into the concepts of
 113 \ctsim. Next, the graphical, command-line, and web shells are
 114 presented. Finally, the installation of \ctsim\ is discussed.
 115
 116 I hope that you enjoy \ctsim!
 117
 118 \include{ctsim-concepts}
 119 \include{ctsim-gui}
 120 \include{ctsim-textui}
 121 \include{ctsim-web}
 122 \include{ctsim-install}
 123 \appendix
 124 \include{ctsim-algorithms}
 125 \include{ctsim-sgp}
 126
 127 \newpage
 128
 129 \bibliographystyle{plain}
 130 \bibliography{ctsim}
 131 \addcontentsline{toc}{chapter}{Bibliography}
 132 \setheader{{\it REFERENCES}}{}{}{\ctsimheadtitle}{}{{\it REFERENCES}}
 133 \ctsimfooter
 134
 135 \newpage
 136 \addcontentsline{toc}{chapter}{Index}
 137 \setheader{{\it INDEX}}{}{}{\ctsimheadtitle}{}{{\it INDEX}} %
 138 \ctsimfooter
 139 \printindex
 140
 141 \end{document}