doc/ctsim.tex

   1 \documentclass[letterpaper,11pt]{report}%
   2 \usepackage{graphicx}
   3 \usepackage{texhelp}
   4 \usepackage{fancyhea}
   5 \usepackage{mysober}
   6 \usepackage{mytitle}
   7 \usepackage{verbatim}
   8 \usepackage{makeidx}
   9 %\usepackage{times}
  10 \usepackage{hyperref}
  11 \input{psbox.tex}
  12
  13 \latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-appendix}}
  14 \hyphenation{poly-gon-al}
  15
  16 \newcommand{\ctsim}{\texttt{CTSim}}
  17 \newcommand{\ctsimtext}{\texttt{CTSimText}}
  18 \newcommand{\usage}{\textbf{Usage}\par}
  19
  20 \newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
  21 \newcommand{\commandrefn}[2]{\helprefn{{\tt $\backslash$#1}}{#2}\index{#1}}%
  22 \newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}
  23 \newcommand{\indexit}[1]{#1\index{#1}}%
  24 \newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
  25
  26 \newcommand{\manvernum}[0]{0.6}
  27 \newcommand{\manver}[0]{v\manvernum}
  28 \newcommand{\mandate}[0]{February 16, 2001}
  29 \newcommand{\ctsimfooter}{\setfooter{\thepage}{}{}{\small Manual \manver}{\small \mandate}{\thepage}}
  30 \newcommand{\doublehyphen}[1]{-\,-\texttt{#1}}
  31 \newcommand{\ctsimvernum}[0]{3.0.0}
  32 \newcommand{\ctsimver}[0]{CTSim \ctsimvernum}
  33 \newcommand{\ctsimheadtitle}{\ctsimver\ Manual}
  34
  35 \latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}
  36
  37 \parskip=10pt%
  38 \parindent=0pt%
  39 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
  40 \title{CTSim 3.0 User Manual}%
  41 \author{Kevin Rosenberg, M.D.}%
  42 \makeindex%
  43
  44 \begin{document}
  45 \textheight=9in
  46 \textwidth=6.5in
  47 \evensidemargin=0in
  48 \oddsidemargin=0in
  49
  50 \maketitle
  51 \pagestyle{fancyplain}
  52 \pagenumbering{roman}
  53
  54 \chapter*{Copyright notice}%
  55 \setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
  56 \setfooter{\thepage}{}{}{}{\manver}{\thepage}%
  57
  58 Copyright (c) 1983-2001 Kevin Rosenberg, M.D.
  59
  60 Permission to use, copy, modify, and distribute this software and its
  61 documentation for any purpose is hereby granted without fee, provided that the
  62 above copyright notice, author statement and this permission notice appear in
  63 all copies of this software and related documentation.
  64
  65 THE SOFTWARE IS PROVIDED ``AS-IS'' AND WITHOUT WARRANTY OF ANY KIND, EXPRESS,
  66 IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY WARRANTY OF
  67 MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.
  68
  69 IN NO EVENT SHALL KEVIN ROSENBERG BE LIABLE FOR ANY
  70 SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND, OR
  71 ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
  72 WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY
  73 OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
  74 PERFORMANCE OF THIS SOFTWARE.
  75
  76 \chapter*{Acknowledgements}
  77 \setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
  78 \setfooter{\thepage}{}{}{}{\manver}{\thepage}%
  79
  80 \textbf{Ian Kay, Ph.D.}\\
  81 Dr. Kay has contributed portions to this manual. He has also assisted the
  82 development of \ctsim\ with his bug reports and fixes.
  83
  84 \textbf{Gabor T. Herman, Ph.D.}\\
  85 Dr. Herman's publications on computed tomography provided me with my initial inspiration
  86 to create \ctsim\ back in 1983. Dr. Herman has graciously permitted use of his
  87 copyrighted head phantom for use in \ctsim.
  88
  89
  90 \setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}%
  91 \ctsimfooter
  92 \parskip=2pt
  93 \tableofcontents%
  94
  95 \parskip=10pt
  96 \chapter{Introduction}\label{IDH_INTRODUCTION}
  97 \pagenumbering{arabic}
  98 \setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
  99 \ctsimfooter
 100
 101
 102 \centerline{\image{3cm;3cm}{logo-huge.eps}}
 103 Computed Tomography is a technique for estimating the interior of an
 104 object from measurement of radiation collected around the object. This
 105 radiation can be either projected through or emitted from the
 106 object. \ctsim\ simulates the process of projecting X-rays
 107 through a phantom object. \ctsim\ can then reconstruct the
 108 interior of the object from those projections. \ctsim\ integrates
 109 numerous visualization and analytic tools.
 110
 111 This manual begins with an introduction into the concepts of
 112 \ctsim. Next, the graphical, command-line, and web shells are
 113 presented. Finally, the installation of \ctsim\ is discussed.
 114
 115 I hope that you enjoy \ctsim!
 116
 117 \include{ctsim-concepts}
 118 \include{ctsim-gui}
 119 \include{ctsim-textui}
 120 \include{ctsim-web}
 121 \include{ctsim-install}
 122 \include{ctsim-appendix}
 123
 124 \newpage
 125
 126 \bibliographystyle{plain}
 127 \bibliography{ctsim}
 128 \addcontentsline{toc}{chapter}{Bibliography}
 129 \setheader{{\it REFERENCES}}{}{}{\ctsimheadtitle}{}{{\it REFERENCES}}
 130 \ctsimfooter
 131
 132 \newpage
 133 \addcontentsline{toc}{chapter}{Index}
 134 \setheader{{\it INDEX}}{}{}{\ctsimheadtitle}{}{{\it INDEX}} %
 135 \ctsimfooter
 136 \printindex
 137
 138 \end{document}