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[ctsim.git] / doc / ctsim.tex
1 \documentclass[11pt]{report}%
2 \usepackage{graphicx}
3 \usepackage{texhelp}
4 \usepackage{fancyhea}
5 %\usepackage{mysober}
6 \usepackage{mytitle}
7 \usepackage{verbatim}
8 \usepackage{makeidx}
9 %\usepackage{times}
10 \usepackage{hyperref}
11 \input{psbox.tex}
12
13 \latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-appendix}}
14 \hyphenation{poly-gon-al}
15
16 \newcommand{\ctsim}{\texttt{CTSim}}
17 \newcommand{\ctsimtext}{\texttt{CTSimText}}
18 \newcommand{\usage}{\textbf{Usage}\par}
19
20 \newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
21 \newcommand{\commandrefn}[2]{\helprefn{{\tt $\backslash$#1}}{#2}\index{#1}}%
22 \newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}
23 \newcommand{\indexit}[1]{#1\index{#1}}%
24 \newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
25
26 \newcommand{\manver}[0]{\small Manual v0.21}
27 \latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}%
28
29 \parskip=10pt%
30 \parindent=0pt%
31 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
32 \title{CTSim 3.0 User Manual}%
33 \author{Kevin Rosenberg, M.D.}%
34 \date{February 9, 2001}%
35 \makeindex%
36
37 \begin{document}%
38 \maketitle%
39 \pagestyle{fancyplain}%
40 \pagenumbering{roman}%
41
42 \setheader{{\it CONTENTS}}{}{}{}{}{{\it CONTENTS}}%
43 \setfooter{\thepage}{}{}{}{\manver}{\thepage}%
44 \parskip=2pt
45 \tableofcontents%
46
47 \parskip=10pt
48 \chapter*{Copyright notice}%
49 \setheader{{\it COPYRIGHT}}{}{}{}{}{{\it COPYRIGHT}}%
50 \setfooter{\thepage}{}{}{}{\manver}{\thepage}%
51
52 Copyright (c) 1983-2001 Kevin Rosenberg, M.D.
53
54 Permission to use, copy, modify, and distribute this software and its
55 documentation for any purpose is hereby granted without fee, provided that the
56 above copyright notice, author statement and this permission notice appear in
57 all copies of this software and related documentation.
58
59 THE SOFTWARE IS PROVIDED ``AS-IS'' AND WITHOUT WARRANTY OF ANY KIND, EXPRESS,
60 IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY WARRANTY OF
61 MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.
62
63 IN NO EVENT SHALL KEVIN ROSENBERG BE LIABLE FOR ANY
64 SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND, OR
65 ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
66 WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY
67 OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
68 PERFORMANCE OF THIS SOFTWARE.
69
70 \chapter{Introduction}\label{introduction}%
71 \pagenumbering{arabic}%
72 \setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
73 \setfooter{\thepage}{}{}{}{\small Manual v0.2}{\thepage}%
74
75 \centerline{\image{3cm;3cm}{logo-huge.eps}}
76 Computed Tomography is
77 a technique for estimating the interior of an object from
78 measurement of radiation collected around the object. This
79 radiation can be either projected through or emitted from the
80 object. \rtfsp\ctsim\ simulates the process of projecting X-rays
81 through a phantom object. \rtfsp\ctsim\ can then reconstruct the
82 interior of the object from the projections collected around the
83 phantom object.
84
85 This manual begins with an introduction into the concepts of
86 \rtfsp\ctsim. Then, the graphical shell, \helprefn{ctsim}{ctsim},
87 is documented followed the the command-line shell,
88 \helprefn{ctsimtext}{ctsimtext}. Finally, the web-based
89 \helprefn{interface}{webinterface} is discussed followed by
90 \helprefn{installation}{installation} instructions.
91
92 I hope that you enjoy \ctsim!
93
94 \include{ctsim-concepts}
95
96 \include{ctsim-gui}
97
98 \include{ctsim-textui}
99
100 \include{ctsim-web}
101
102 \include{ctsim-install}
103
104 \include{ctsim-appendix}
105
106 \newpage
107
108 \bibliographystyle{plain}
109 \bibliography{ctsim}
110 \addcontentsline{toc}{chapter}{Bibliography}
111 \setheader{{\it REFERENCES}}{}{}{}{}{{\it REFERENCES}}%
112 \setfooter{\thepage}{}{}{}{\manver}{\thepage}%
113
114 \addcontentsline{toc}{chapter}{Index}
115 \setheader{{\it INDEX}}{}{}{}{}{{\it INDEX}} %
116 \setfooter{\thepage}{}{}{}{\manver}{\thepage} %
117 \printindex %
118
119 \end{document}