\appendix
\chapter{Simple Graphics Package}\label{appendix}\index{Appendix}%
-\setheader{{\it Appendix \thechapter}}{}{}{}{}{{\it Appendix \thechapter}}%
+\setheader{{\it Appendix \thechapter}}{}{}{\ctsimheadtitle}{}{{\it Appendix \thechapter}}%
\ctsimfooter%
\chapter{Concepts}\index{Concepts}%
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
+\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
\ctsimfooter%
\section{Overview}\label{conceptoverview}\index{Concepts,Overview}%
To compare two images, $A$ and $B$, each of which has $n$ columns and $m$ rows,
these values are calculated as below.
+
+\latexonly{
\begin{equation}
d = \frac{\sum_{i=0}^{n}{\sum_{j=0}^{m}{(A_{ij} - B_{ij})^2}}}{m n}
\end{equation}
\begin{equation}
-r = max(|A_{ij} - B{ij}|)
+r = \max(|A_{ij} - B{ij}|)
\end{equation}
+}
\chapter{The Graphical User Interface}\label{ctsim}\index{ctsim}%
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
+\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
\ctsimfooter%
\twocolitem{\textbf{Filter Generation}}{Selects the filter
generation. With convolution, \texttt{direct} is the proper method
to select. With any of the frequency methods,
-\texttt{inverse-fourier}is the best method.
+\texttt{inverse-fourier} is the best method.
\begin{itemize}\itemsep=0pt
\item direct
\item inverse-fourier
\chapter{Installation}\label{installation}\index{Installation}%
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
+\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
\ctsimfooter%
\section{Download}\label{download}\index{Installation,Download}%
\ctsim\ is not compatible with the stock Windows 95 system.
\section{Installing Linux RPM}\index{Installation,Linux}%
-Download the RPM file from as \helprefn{shown}{download}. Then use
+Download the RPM file, then use
the \texttt{rpm} manager program:\\
\hspace{1cm}\texttt{rpm -Uvh} \emph{ctsim-*.rpm}\\
\chapter{The Command Line Interface}\label{ctsimtext}\index{ctsimtext}%
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
+\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
\ctsimfooter%
-\ctsimtext\ is a master shell for all of the command-line utilities.
+\ctsimtext\ is a master shell for all of the command-line utilities. The
+command-line utilities can perform most of the functions of the graphical
+shell. These command-line utilities are especially appropriate for use on
+systems without graphics, batch files, and parallel processing in a Beowulf
+computer cluster.
\usage \ctsimtext\ can be invoked via three different
methods.
\ctsimtext\ offers a command-line to enter the function-names and
their parameters. The output of the command is displayed. Further
commands may be given to \ctsimtext. The shell is exited by the
-\texttt{quit} command.
+\texttt{quit} command. \ctsimtext\ uses the
+\urlref{readline}{http://www.gnu.org} library on UNIX and Linux platforms
+to provide for command history processing.
\item \ctsimtext\ can also be called to
execute a single command. This is especially useful for batch
\end{enumerate}
-\section{Parallel Processing With a Computer Cluster}
+\section{Parallel Processing}
\ctsimtext\ can be used to spread it's processing over a cluster. Specifically,
\ctsimtext\ supports the \urlref{LAM}{http://www.mpi.nd.edu/lam} version of
the MPI environment. On platforms with LAM installed, a parallel version of
\chapter{The Web Interface}\label{webinterface}\index{Web Interface}%
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
+\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
\ctsimfooter%
\section{Overview}\index{Web Interface,Overview}%
\texttt{ctsim.cgi} takes projections of a standard phantom object,
performs reconstruction, and then compares the rasterized phantom
object with the reconstruction. The comparison is performed both
-visually by an image subtraction as well as by standard statistics
-as described by Herman\cite{HERMAN80}.
+visually by an image subtraction as well as by statistical
+analysis.
\section{Requirements}\index{Web Interface,Requirements}%
\begin{itemize}\itemsep=0pt
current web browsers support PNG.
\item A knowledgable system administrator. It is beyond the
- scope of this manual to explain the installation of the CGI
- interfact.
+ scope of this manual to explain the configuration a web server.
\end{itemize}
\usepackage{graphicx}
\usepackage{texhelp}
\usepackage{fancyhea}
-%\usepackage{mysober}
+\usepackage{mysober}
\usepackage{mytitle}
\usepackage{verbatim}
\usepackage{makeidx}
\newcommand{\mandate}[0]{February 12, 2001}
\newcommand{\ctsimfooter}{\setfooter{\thepage}{}{}{\small Manual \manver}{\small \mandate}{\thepage}}
\newcommand{\doublehyphen}[1]{-\,-\texttt{#1}}
+\newcommand{\ctsimvernum}[0]{3.0.0beta1}
+\newcommand{\ctsimver}[0]{CTSim \ctsimvernum}
+\newcommand{\ctsimheadtitle}{\ctsimver Manual}
\latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}
\pagestyle{fancyplain}%
\pagenumbering{roman}%
-\setheader{{\it CONTENTS}}{}{}{}{}{{\it CONTENTS}}%
+\setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}%
\ctsimfooter
\parskip=2pt
\tableofcontents%
\parskip=10pt
\chapter*{Copyright notice}%
-\setheader{{\it COPYRIGHT}}{}{}{}{}{{\it COPYRIGHT}}%
+\setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
\setfooter{\thepage}{}{}{}{\manver}{\thepage}%
Copyright (c) 1983-2001 Kevin Rosenberg, M.D.
\chapter{Introduction}\label{introduction}
\pagenumbering{arabic}
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
+\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
\ctsimfooter
\bibliographystyle{plain}
\bibliography{ctsim}
\addcontentsline{toc}{chapter}{Bibliography}
-\setheader{{\it REFERENCES}}{}{}{}{}{{\it REFERENCES}}%
-\ctsimfooter%
+\setheader{{\it REFERENCES}}{}{}{\ctsimheadtitle}{}{{\it REFERENCES}}
+\ctsimfooter
\addcontentsline{toc}{chapter}{Index}
-\setheader{{\it INDEX}}{}{}{}{}{{\it INDEX}} %
-\ctsimfooter %
-\printindex %
+\setheader{{\it INDEX}}{}{}{\ctsimheadtitle}{}{{\it INDEX}} %
+\ctsimfooter
+\printindex
\end{document}
\includeonly [1]{}
\frac [2]{}
\nonumber [0]{}
-
+\sum [0]{}
+\max [0]{}
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